gov.noaa.nmfs.inport:45954 eng UTF8 dataset CSV Files Pacific Islands Fisheries Science Center 808-725-5300 1845 Wasp Blvd. Honolulu HI 96818 USA https://www.pifsc.noaa.gov WWW:LINK-1.0-http--link Website Website for this organization information 8:00 a.m. - 4:30 p.m. resourceProvider Luers, Lori H 1845 Wasp Blvd. Honolulu HI 96818 USA lori.luers@noaa.gov pointOfContact 2026-03-04T19:17:25 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for imagery and gridded data ISO 19115-2:2009(E) Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015 Philippines: diel surveys 2017 publication NOAA/NMFS/EDM 45954 https://www.fisheries.noaa.gov/inport/item/45954 WWW:LINK-1.0-http--link Full Metadata Record View the complete metadata record on InPort for more information about this dataset. information Pacific Islands Fisheries Science Center 808-725-5360 1845 Wasp Blvd. Honolulu HI 96818 USA pifsc.info@noaa.gov https://www.pifsc.noaa.gov WWW:LINK-1.0-http--link Pacific Islands Fisheries Science Center Website Pacific Island Fisheries Science Center homepage information 8:00 a.m. - 4:30 p.m. originator https://pifscblog.wordpress.com/2013/03/06/verde-island-passage/ WWW:LINK-1.0-http--link Blog post: 2013 field mission to the Philippines NOAA PIFSC Coral Reef Ecosystem Program blog post from the 2013 mission to the Philippines. download https://www.coraltriangleinitiative.org WWW:LINK-1.0-http--link Coral Triangle Initiative Official website download https://www.fisheries.noaa.gov/pacific-islands/ecosystems/surveying-vast-ocean WWW:LINK-1.0-http--link Ecosystem Sciences Pacific Islands Fisheries Science Center website download tableDigital The data provided in this data set are from diel surveys conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD)---formerly the Coral Reef Ecosystem Division---in the Philippines from May 21-31, 2015. The ocean acidification diel suite is an autonomous instrument package that measures diel variability in coral reef seawater carbonate chemistry. These diel suites were deployed on hard-bottom shallow-water (< 15 m) habitats at fixed climate survey sites located within coral reef ecosystems. The diel suites were deployed on the reef for at least 24 hours to measure in-situ salinity, temperature, pressure, pH, current direction and magnitude, and dissolved oxygen. Seawater samples were also collected for laboratory analyses of dissolved inorganic carbon (DIC) and total alkalinity (TA). Components of the carbonate system--including pH, pCO2 (partial pressure of carbon dioxide), and aragonite saturation state--are calculated from DIC, TA, temperature, salinity and pressure. Each diel suite consisted of: 1 SBE-19plus CTD sensor, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, 1 SBE 43 dissolved oxygen sensor co-located with the CTD, and up to 9 Programmable Underwater Collectors (PUCs), each of which collected 1 water sample at 4-hour intervals. Instruments deployed, samples collected, and sample intervals are recorded in the summary file in the data package. ESD's manual seawater sampling and other field monitoring efforts are limited to daylight hour operations. As a result, these data sets do not capture full 24-hour variability in coral reef physical and chemical environments. The ocean acidification diel suite was developed to increase the temporal resolution and coverage of oceanographic and carbonate chemistry measurements and contextualize daytime sampling within the full diel cycle. PIFSC Ecosystem Sciences Division and funded by the NOAA Coral Reef Conservation Program and the United States Agency for International Development completed Barkley, Hannah C 1845 Wasp Blvd. Honolulu HI 96818 USA hannah.barkley@noaa.gov pointOfContact Barkley, Hannah C 1845 Wasp Blvd. Honolulu HI 96818 USA hannah.barkley@noaa.gov custodian notPlanned CSV files were updated with new columns in 2021 in order to standardize table structure across other diel suite data sets. 483 Climate, Biodiversity and Fisheries in the Coral Triangle: Embracing the E in Ecosystem Approaches to Fisheries Management theme CRCP Project Numeric Data Sets > Oceanography theme CoRIS Discovery Thesaurus EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Baseline studies EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Chemical EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Physical EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs EARTH SCIENCE > Oceans > Ocean Chemistry > Alkalinity EARTH SCIENCE > Oceans > Ocean Chemistry > Carbon Dioxide > Partial Pressure EARTH SCIENCE > Oceans > Ocean Chemistry > Carbonate Chemistry EARTH SCIENCE > Oceans > Ocean Chemistry > Chemistry Monitoring and Assessment EARTH SCIENCE > Oceans > Ocean Chemistry > Climate Change EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolution EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolved Gases EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolved Inorganic Carbon EARTH SCIENCE > Oceans > Ocean Chemistry > Ocean Acidification EARTH SCIENCE > Oceans > Ocean Chemistry > Oxygen EARTH SCIENCE > Oceans > Ocean Chemistry > Saturation State EARTH SCIENCE > Oceans > Ocean Chemistry > pH EARTH SCIENCE > Oceans > Ocean Circulation EARTH SCIENCE > Oceans > Ocean Circulation > Water Current Direction EARTH SCIENCE > Oceans > Ocean Circulation > Water Velocity EARTH SCIENCE > Oceans > Ocean Temperature > Water Temperature EARTH SCIENCE > Oceans > Ocean Temperature > Water Temperature > Bottom EARTH SCIENCE > Oceans > Salinity/Density > Conductivity EARTH SCIENCE > Oceans > Salinity/Density > Density EARTH SCIENCE > Oceans > Salinity/Density > Salinity theme CoRIS Theme Thesaurus ARAGONITE SATURATION STATE CONDUCTIVITY CURRENT METER - DIRECTION CURRENT METER - SPEED DEPTH - SENSOR DISSOLVED INORGANIC CARBON (DIC) DISSOLVED OXYGEN HYDROSTATIC PRESSURE SALINITY SIGMA-T WATER TEMPERATURE pH partial pressure of carbon dioxide - water total alkalinity theme NODC DATA TYPES THESAURUS ADCP CTD - moored CTD Coulometer for DIC measurement oxygen meter pH sensors titrator theme NODC INSTRUMENT TYPES THESAURUS continuous current measurements in situ laboratory analyses physical time series profile water chemistry theme NODC OBSERVATION TYPES THESAURUS CORAL REEF STUDIES Coral Reef Conservation Program Coral Triangle Initiative theme NODC PROJECT NAMES THESAURUS US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division theme NODC SUBMITTING INSTITUTION NAMES THESAURUS COUNTRY/TERRITORY > Philippines > Batangas > Mabini (13N120E0032) COUNTRY/TERRITORY > Philippines > Batangas > Tingloy (13N120E0009) COUNTRY/TERRITORY > Philippines > Batangas > Twin Rocks Sanctuary (13N120E0005) OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Mabini (13N120E0032) OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Twin Rocks Sanctuary (13N120E0005) OCEAN BASIN > Pacific Ocean > South China Sea > Maricaban Island > Tingloy (13N120E0009) place CoRIS Place Thesaurus NW Pacific (limit-180) place NODC SEA AREA NAMES THESAURUS ADCP Acoustic Doppler Current Profiler CRED CREP CTD Coral Reef Ecosystem Division Coral Reef Ecosystem Program Coral Triangle Initiative ESD Ecosystem Sciences Division Ocean pH PIFSC PUC Pacific Islands Fisheries Science Center Programmable Underwater Collector USAID United States Agency for International Development conductivity temperature depth water samples theme diel temporal Batalang Bato Batong Buhay Philippines Twin Rocks Verde Island Passage place DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce dataCentre Global Change Master Directory (GCMD) Data Center Keywords 2017-04-24 publication 8.5 Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA) https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords GCMD Keyword Forum Page Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 22. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords information custodian Baseline data from Climate Stations in Batangas, Philippines from 2012 to 2015 project InPort otherRestrictions Cite As: Pacific Islands Fisheries Science Center, [Date of Access]: Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015 [Data Date Range], https://www.fisheries.noaa.gov/inport/item/45954. NOAA provides no warranty, nor accepts any liability occurring from any incomplete, incorrect, or misleading data, or from any incorrect, incomplete, or misleading use of the data. It is the responsibility of the user to determine whether or not the data is suitable for the intended purpose. otherRestrictions Access Constraints: None otherRestrictions Use Constraints: These oceanographic data are PRELIMINARY data and have not been screened for accuracy. NOAA can not be held liable for use of these data in a manner other than for perusal of preliminary oceanographic data for scientific research on coral reefs ecosystems. Please cite PIFSC Ecosystem Sciences Division (ESD) when using the data. Suggested citation: Ecosystem Sciences Division; Pacific Islands Fisheries Science Center, 2019: Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015, https://www.fisheries.noaa.gov/inport/item/45954. otherRestrictions Distribution Liability: While every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. unclassified Not applicable Not applicable Assessing cryptic reef diversity of colonizing marine invertebrates using Autonomous Reef Monitoring Structures (ARMS) deployed at coral reef sites in Batangas, Philippines from 2012 to 2015 NOAA/NMFS/EDM 45818 crossReference Benthic images collected at coral reef sites in Batangas, Philippines in 2012 and 2015 NOAA/NMFS/EDM 45820 crossReference Benthic percent cover derived from analysis of benthic images collected at coral reef sites in Batangas, Philippines in 2015 NOAA/NMFS/EDM 45819 crossReference Calcification Rates of Crustose Coralline Algae (CCA) Derived from Calcification Accretion Units (CAUs) Deployed at Coral Reef Sites in Batangas, Philippines from 2012 to 2015 NOAA/NMFS/EDM 45816 crossReference Water Chemistry and Shallow Water Conductivity-Temperature-Depth (CTD) Profiles for select locations across Batangas, Philippines from 2012 to 2015 NOAA/NMFS/EDM 45817 crossReference NOAA Data Management Plan (DMP) NOAA/NMFS/EDM 45954 https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/pifsc/dmp/pdf/45954.pdf WWW:LINK-1.0-http--link NOAA Data Management Plan (DMP) NOAA Data Management Plan for this record on InPort. information crossReference eng; US oceans Raw data are downloaded from the instruments, processed in R, and migrated to the PIFSC Oracle database. Water sample data is stored in an MS Access database. Mabini and Tingloy in Batangas, Philippines 120.8837 120.895127 13.658594 13.727882 Diel survey locations in the municipalities of Mabini and Tingloy in Batangas, Philippines (near the Verde Island Passage), including Batong Buhay, Twin Rocks, and Batalang Bato. Time period of diel surveys. | Currentness: Ground Condition 2015-05-21 2015-05-31 The Ecosystem Sciences Division (ESD) at NOAA Fisheries is conducting in-situ climate monitoring across the U.S. Pacific Islands Region. Climate monitoring provides a comprehensive view of climate change impacts on coral reef ecosystems and helps identify areas of resilience and vulnerability. The key indicators used to identify and monitor climate-driven trends include 1) thermal stress caused by changes in sea temperature, 2) ocean acidification resulting from changes in carbonate chemistry, and 3) ecological impacts by collecting data on coral growth rates and community structure to understand the impacts of thermal stress and ocean acidification on the ecosystem. This particular dataset for the Philippines is part of a 3-year project ("Climate, Biodiversity and Fisheries in the Coral Triangle: Embracing the E in Ecosystem Approaches to Fisheries Management") implemented by ESD. This project was funded by NOAA's Coral Reef Conservation Program (CRCP) and the U.S. Agency for International Development (USAID) Regional Development Mission Asia (RDMA) as part of the U.S. Coral Triangle Initiative, with additional support from the Coral Triangle Support Partnership and USAID Philippines. The goal of the project was to build on ESD's expertise to provide tools and information about climate change, ocean acidification, and their impacts on biodiversity and fisheries that could inform and be incorporated into an Ecosystem Approach to Fisheries Management (EAFM) for the Philippines. ESD worked with local governments, communities, and NGOs to build science capacity by establishing robust observing capabilities and providing hands-on training to initiate collection of climate science information for the Verde Island Passage in the Philippines that can be used toward adaptive EAFM. ESD traveled to the Verde Island Passage region of the Philippines in 2012 to deploy moored oceanographic (subsurface temperature recorders [STRs]) and ecological (calcification accretion units [CAUs] and autonomous reef monitoring structures [ARMS]) instrumentation, to collect surface and bottom water samples, and to conduct benthic photo-quadrat surveys, which included the collection of benthic images; in 2013 to collect additional water samples; and again in 2015 to recover the instrumentation and to collect another round of water samples and benthic images and to conduct diel surveys. All activities were conducted by SCUBA divers at five locations in the municipalities of Mabini and Tingloy, including Batong Buhay, Koala Reserve Area, Arthur's Reef, Twin Rocks, and Batalang Bato. At each of the five locations, a shallow and deep survey site was established for a total of 10 survey sites. false eng false Data Table Spreadsheet ESD_DS_DataDict_2015_CT_ADCP 2021-09-01 publication ESD_DS_DataDict_2015_CT_CTD 2021-09-01 publication ESD_DS_DataDict_2015_CT_SUMMARY 2021-09-01 publication ESD_DS_DataDict_2015_CT_H2O 2021-09-01 publication ESD_DS_DataDict_2015_CT_PH 2021-09-01 publication CSV - Comma Separated Values (Text) CSV - Comma Separated Values (Text) CSV - Comma Separated Values (Text) CSV - Comma Separated Values (Text) CSV - Comma Separated Values (Text) CSV - Comma Separated Values (Text) NOAA National Centers for Environmental Information ncei.info@noaa.gov https://www.ncei.noaa.gov/contact WWW:LINK-1.0-http--link NCEI Contact Information Information for contacts at NCEI. information distributor https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT Directory folder that contains all instrument datasets as well as the summary file for the diel suite deployments in Batangas, Philippines in 2015. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_DO Instrument data from the SBE-43 oxygen sensor co-located with the CTD during diel suite deployments in Batangas, Philippines in 2015. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_SUMMARY Summary of the diel suite deployment in 2015 with information on the cruise and specific sites, as well as instruments and sampling intervals; different instruments could be deployed at different sites or instruments could have malfunctioned. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_H2O Calculated carbonate chemistry data from the water samples collected with diel suite deployment in Batangas, Philippines in 2015. Includes columns as necessary for outsourcing the water sample analysis. Refer to data dictionary for details. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_CTD Instrument data from CTD sensor in diel suite deployments. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_PH Instrument data from pH sensor in diel suite deployed. download https://accession.nodc.noaa.gov/0189727 WWW:LINK-1.0-http--link ESD_CTI_DS_2015_CT_ADCP Instrument data from ADCP in the 2015 diel suite deployments in the Philippines. download dataset Representativeness Seawater carbonate chemistry at the benthos is dynamic and driven by physical and biological processes occurring at time scales of minutes to days. The measurements and analyses from this instrument suite is representative of the water column chemistry at the time of measurement, but this highly variable environment allows for a fairly wide distribution of measured values. Accuracy Water samples: accuracy of seawater carbonate chemistry laboratory analysis is explained in detail in Dickson et al (2007), SOP #2: Determination of total dissolved inorganic carbon in sea water, and SOP #3b: Determination of total alkalinity in sea water using an open-cell titration. Satlantic SeaFET Ocean pH sensor: measurement range: 6.5-9.0 pH; salinity range: 2-40 psu; accuracy: +/- 0.05 pH; precision: better than 0.001 pH; resolution: 0.0001 pH; stability: 0.005 pH/mo SBE-19plus CTD sensor: Conductivity - measurement range: 0-9 S/m; accuracy: +/- 0.0005 S/m; stability: 0.0003 S/m per month; resolution: 0.00005 S/m; Temperature - measurement range: -5-35 deg C; accuracy: +/-0.005 deg C; stability: 0.0002 deg C per month; resolution: 0.0001 deg C; Pressure - measurement range: 0-600 m; accuracy: +/- 0.1%; stability: +/- 0.1%; resolution: 0.002% SBE 43 oxygen sensor: Measurement range: 120% surface saturation; accuracy: +/- 2% of saturation; stability: 0.5% per 1000 hours Nortek Acoustic Doppler Current Profiler 1MHz: Profiling range: 12-25 m; accuracy: +/- 1% Completeness Measure The entire suite of instrumentation is deployed during diel surveys; however, various issues can occur with any one or several of the instruments during the deployment thereby limiting the data recovered. While PUCs are programmed to collect water on this regular sampling schedule, issues with the pumps can occasionally result in missing samples for some of the time steps. Field Precision Redundant data are collected to ensure accuracy of the methods/instrumentation. pH is captured from the discrete water samples and pH sensor. Pressure is captured by the ADCP and the CTD. Temperature is captured by the pH sensor and the CTD. Completeness Report All analyzed samples and measured values are included. NULL values in the data, where they exist, indicate that the observation/analysis was not conducted for the sample record where it appears. Conceptual Consistency The data are very consistent, sample collection and processing protocols detailed in Dickson et al (2007) are adhered to rigorously, both in the field (SOP #1) and in the laboratory (SOP #2 and #3b). The ocean acidification diel suite is a collection of instruments deployed by SCUBA divers onto the seafloor that makes autonomous measurements and collects seawater samples. For a typical deployment, the diel suite consists of: 1 Sea Bird Electronics (SBE)-19plus CTD, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, 1 SBE 43 dissolved oxygen sensor, and up to 9 Programmable Underwater Collectors (PUCs), where each PUC collects 1 water sample at a 4-hour interval over a minimum 24-hour period. All instruments are weighted or zip-tied to rubble on the seafloor, or both, to secure the position of the instrumentation for the duration of the deployment. Water samples collected with Programmable Underwater Collectors (PUC) Developed by Dr. Chris Langdon's laboratory at the University of Miami, PUCs are computerized timers attached to a low-power peristaltic pump. An array of PUCs collects water samples at 4-hour intervals over the course of at least 24-hours, usually starting at 12:00 pm local time on day 1 and ending at 12:00 pm on day 2. While PUCs are programmed to collect water on this regular sampling schedule, issues with the pumps can occasionally result in missing samples for some of the time steps. Samples are collected underwater in tedlar bags pre-poisoned with mercuric chloride and transferred to glass bottles within a few hours of recovery. Water samples are analyzed for DIC using a coulometer (SOP #2) and for TA using a titrator (SPO #3b) by the NOAA Pacific Marine Environmental Laboratory. Full carbon system chemistry values (including pH, pCO2, and aragonite saturation state) are derived from DIC/TA and salinity/temperature/pressure data from a co-deployed CTD using the R package seacarb. Discrete sample pH data are compared to SeaFET pH data. Barkley, Hannah C hannah.barkley@noaa.gov processor Acoustic Doppler Current Profiler (ADCP) sensor The diel suite includes either a side-looking ADCP. ADCP measurements are collected at 10 minute intervals and binned by height above the sensor. Each height bin is represented in the data set as the upper limit of the bin height above the sensor on the seafloor (for example, a 1.4 m bin represents current data collected between 0.4 m and 1.4 m above the ADCP). ADCP data include a blanking region, or a small distance in front of the transducer in which measurements cannot be made, of 0.2-0.4 m. Current data are grouped into 1-m height bins. Raw data downloaded from the ADCP are processed in R using the oce package. XYZ coordinate data are converted to ENU (east-north-up) coordinate system. Current speed is calculated as the square root of the sum of the squared u and v velocities and direction as the arctan(v/u). Data are trimmed to a maximum height bin for each time step using pressure data to remove above-water signal. As a result, NULL values may exist for larger height bins above the surface of the water due to waves and tides. Barkley, Hannah C hannah.barkley@noaa.gov processor Conductivity-Temperature-Depth (CTD) sensor CTD data are collected by a Sea Bird Electronics 19plus v2 SeaCAT every 10 minutes. Data are uploaded as HEX files, converted to CNV using SBE Data Processing Software, and converted to CSV using the 'oce' package in R. Barkley, Hannah C hannah.barkley@noaa.gov processor SeaFET pH sensor The SeaFET pH measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode. The electrode is conditioned in running seawater up to a week prior to deployment and stored in artificial seawater between deployments. pH data are collected in bursts of 30 measurements every 5 minutes. The SeaFET is co-deployed with a CTD, and temperature and salinity values from the CTD time series are used to correct the raw pH time series. The SeaFET derives pH from both internal and external potentiometric cells, but only external pH is reported. SeaFET pH values are compared to pH values calculated from discrete TA and DIC samples collected at the same time and location. Barkley, Hannah C hannah.barkley@noaa.gov processor Dissolved oxygen sensor An SBE-43 dissolved oxygen sensor is co-located with the SBE-19plus CTD. Barkley, Hannah C hannah.barkley@noaa.gov processor Source Contribution: Dickson et al (2007) Protocols to collect, process, and analyze water samples for DIC and TA: SOP 1: Water Sampling for the parameters of the oceanic carbon dioxide system SOP 2: Determination of total dissolved inorganic carbon in sea water SOP 3b: Determination of total alkalinity in sea water using an open-cell titration Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp. 2007-10-01 publication https://www.nodc.noaa.gov/ocads/oceans/Handbook_2007.html WWW:LINK-1.0-http--link Ocean Carbon Data System (OCADS), Access Data Guide to Best Practices for Ocean CO2 Measurements information Source Contribution: Data processing protocol SOP for instrument data processing using the R package occ 2019-05-31 publication Hannah Barkley https://rpubs.com/hbarkley/occ_SOP WWW:LINK-1.0-http--link RPubs Easy web publishing from R information originator otherRestrictions otherRestrictions Access Constraints: None | Use Constraints: None Aquadopp Profiler acoustic doppler current profiler (ADCP) Current profiler: Nortek Aquadopp Profiler 1 MHz or 2 MHz. Small and compact, with up to 25 m or 40 m current profiling range, respectively. Programmable Underwater Collector (PUC) Water Sampler Programmable Underwater Collectors (PUC) are computerized timers attached to a low-power peristaltic pump to collect water samples at episodic intervals (i.e., every 4 hrs over a 24-hr period). Designed and Developed by Dr. Chris Langdon’s laboratory at the University of Miami, Rosenstiel School of Marine and Atmospheric Science. SBE 19plus V2 conductivity, temperature, depth The SBE 19plus V2 (Version 2) SEACAT Profiler measures conductivity, temperature, and pressure (depth) and provides high accuracy and resolution, reliability, and ease-of-use for a wide range of research, monitoring, and engineering applications. The pump-controlled, TC-ducted flow configuration minimizes salinity spiking caused by ship heave and allows for slow descent rates without slowing sensor responses, improving dynamic accuracy and resolving small scale structure in the water column. SeaFET v2 Ocean pH Sensor SeaFET v2 Ocean pH Sensor measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode. Diel Suite The Ocean Acidification Diel Suite is not a physical platform (boat, buoy, etc.), but rather a collection of instruments deployed together on the seafloor that makes autonomous measurements and collects seawater samples, which allows for the quantification of 24-hr variability in seawater carbonate chemistry present at the reef. Aquadopp Profiler acoustic doppler current profiler (ADCP) Current profiler: Nortek Aquadopp Profiler 1 MHz or 2 MHz. Small and compact, with up to 25 m or 40 m current profiling range, respectively. Programmable Underwater Collector (PUC) Water Sampler Programmable Underwater Collectors (PUC) are computerized timers attached to a low-power peristaltic pump to collect water samples at episodic intervals (i.e., every 4 hrs over a 24-hr period). Designed and Developed by Dr. Chris Langdon’s laboratory at the University of Miami, Rosenstiel School of Marine and Atmospheric Science. SBE 19plus V2 conductivity, temperature, depth The SBE 19plus V2 (Version 2) SEACAT Profiler measures conductivity, temperature, and pressure (depth) and provides high accuracy and resolution, reliability, and ease-of-use for a wide range of research, monitoring, and engineering applications. The pump-controlled, TC-ducted flow configuration minimizes salinity spiking caused by ship heave and allows for slow descent rates without slowing sensor responses, improving dynamic accuracy and resolving small scale structure in the water column. SeaFET v2 Ocean pH Sensor SeaFET v2 Ocean pH Sensor measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode.