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                        <gco:CharacterString>NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD) Benthic Monitoring Briefs available for FTP download for surveys starting in 2016. Monitoring briefs provide timely release of a summary overview of monitoring effort and preliminary data following a research expedition led by ESD, including Pacific Reef Assessment and Monitoring Program cruises and other missions. This type of report is intended as an initial and provisional summary of the data collected, and the information contained in these briefs is subject to change.</gco:CharacterString>
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            <gco:CharacterString>Swanson, D., Bailey, H., Schumacher, B., Ferguson, M., and B. Vargas-Ãngel. 2018. Ecosystem Sciences Division Standard Operating Procedures: Data Collection for Rapid Ecological Assessment Benthic Surveys. NOAA Tech. Memo. NMFS-PIFSC-71, 63 p. https://doi.org/10.25923/39jh-8993</gco:CharacterString>
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        <gco:CharacterString>NCRMP CORAL DEMOGRAPHIC DATA HAS NOW BEEN MERGED INTO A PACIFIC-WIDE METADATA RECORD -- PLEASE REFER TO https://www.fisheries.noaa.gov/inport/item/71550 FOR MOST UPDATED DATA.


The data described here result from benthic coral demographic surveys within belt transects of specified length and width for two life stages (juveniles and adults) across the islands and atolls of the Pacific Remote Island Areas from 2014 to 2018. The data provide information on adult coral colony counts, morphology, size, partial mortality (old and recent dead), presence and causation of disease and other compromised health conditions, including bleaching. Juvenile colony surveys include morphology and size. Taxonomic identification of adult colonies is to the species level and genus level for juveniles.

A two-stage stratified random sampling (StRS) design was employed to survey the coral reef ecosystems of the Pacific Remote Island Areas from 2014 to 2017, and starting in 2018 a one-stage StRS design was employed. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0â30 m depth range. The stratification scheme included island, reef zone, and depth (i.e., shallow: &gt;0â6 m; mid-depth: &gt;6â18 m; and deep: &gt;18â30 m), as well as reef zone (i.e., forereef, backreef, lagoon, and protected slope; the latter three only at Johnston and Kingman). Sampling effort allocation was determined based on strata area and sites randomly located within strata. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than more transects per site. Therefore, site-level estimates and site-to-site comparisons should proceed with caution.

The data were collected as part of the NOAA Pacific Islands Fisheries Science Center (PIFSC) and Ecosystem Sciences Division (ESD; formerly the Coral Reef Ecosystem Division) led National Coral Reef Monitoring Program (NCRMP) missions around the islands and atolls of the Pacific Remote Island Areas from 2014 to 2018.</gco:CharacterString>
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Ecosystem Sciences Division; Pacific Islands Fisheries Science Center (2019). National Coral Reef Monitoring Program: Stratified Random Surveys (StRS) of Coral Demography (Adult and Juvenile Corals) across the Pacific Remote Island Areas since 2014. NOAA's National Center for Environmental Information, https://www.fisheries.noaa.gov/inport/item/36166</gco:CharacterString>
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ERDDAP acts as a middleman between you and various remote data servers. ERDDAP offers an easy-to-use, consistent way to request data: via the OPeNDAP standard. Many datasets can also be accessed via ERDDAP's Web Map Service (WMS). ERDDAP returns data in the common file format of your choice. ERDDAP offers all data as .html table, ESRI .asc and .csv, Google Earth .kml, OPeNDAP binary, .mat, .nc, ODV .txt, .csv, .tsv, .json, and .xhtml. ERDDAP can also return a .png or .pdf image with a customized graph or map. ERDDAP also has web pages (for humans with browsers) and RESTful web services (for computer programs).</gco:CharacterString>
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ERDDAP acts as a middleman between you and various remote data servers. ERDDAP offers an easy-to-use, consistent way to request data: via the OPeNDAP standard. Many datasets can also be accessed via ERDDAP's Web Map Service (WMS). ERDDAP returns data in the common file format of your choice. ERDDAP offers all data as .html table, ESRI .asc and .csv, Google Earth .kml, OPeNDAP binary, .mat, .nc, ODV .txt, .csv, .tsv, .json, and .xhtml. ERDDAP can also return a .png or .pdf image with a customized graph or map. ERDDAP also has web pages (for humans with browsers) and RESTful web services (for computer programs).</gco:CharacterString>
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            <gco:CharacterString>Observations were made by experienced benthic survey personnel who have been trained, undergone a series of calibration surveys and coral taxon identification testing, and have met a set of minimum standards for colony assessment and taxon identification in each region.  The accuracy of species and genus level identification was high.  The lowest taxonomic level of coral identification was genus except for a select number of species that were consistently identified to species by all divers conducting the surveys.  The number of species may change for each survey year depending on the experience and training of the benthic divers. The list of coral species is included for each survey year. In other words, the individual records may include many more species than encompassed by the lists; however, these were not consistently identified across all surveys so these records should be assessed at the genus level.  

Handheld GPS units were used to locate random sites and mark site locations.</gco:CharacterString>
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            <gco:CharacterString>Only shallow water (0 to 30 meter depth range) hard-bottom habitats are surveyed. The survey sites were randomly selected using a systematic process based on available habitat and bathymetric data. Although efforts are made to include broad spatial coverage of surveys at each island, weather conditions and other environmental constraints may have prevented the team from surveying exposed reef areas.

The value -9 has been used a placeholder or missing value for several fields. See the entities and attributes under 'child items'.</gco:CharacterString>
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            <gco:CharacterString>The stratified random sampling (StRS) design and belt transect methodology for adult and juvenile corals, employed by the PIFSC Ecosystem Sciences Division (ESD) since 2013. A two-stage StRS design was employed from 2014 to 2017 and starting in 2018 a one-stage design was employed.</gco:CharacterString>
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                <gco:CharacterString>A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems in the region (two-stage StRS from 2014 to 2017 and switched to a one-stage StRS design in 2018. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats. The stratification scheme included island, reef zone, and depth. Depth categories of shallow (&gt;0-6 m), mid (&gt;6-18 m) and deep (&gt;8-30 m) were also incorporated into the stratification scheme. Allocation of sampling effort was proportional to strata area. Sites were randomly selected within each stratum.

A geographic information system (GIS) and digital spatial databases of benthic habitats (NOAA National Centers for Coastal Ocean Science NCCOS), reef zones (IKONOS satellite imagery, NDGC 1998) bathymetry (NDGC 1998, ESD benthic mapping data), and marine reserve boundaries (NOAA) were used to facilitate spatial delineation of the sampling survey domain, strata, and sample units.  Map resolution was such that the survey domain could be overlain by a grid using a GIS with individual cells of size 50 m by 50 m in area.  The two-stage sampling scheme following Cochran (1977) was employed to control for spatial variation in population parameters at scales smaller than the grid cell minimum mapping unit (2,500 sq. meters). Grid cells containing hard-bottom reef habitats were designated as primary sample units (referred to as sites), while the second-stage sample unit was defined as a diver visual belt transect of fixed area (10 sq. meters or less). The primary sample units were the same for both sampling schemes (one-stage and two-stage).</gco:CharacterString>
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                <gco:CharacterString>At each site, benthic Rapid Ecological Assessment (REA) surveys were conducted within two 10 sq. meter belt transects from 2014 to 2017 and within one 10 sq. meter transect starting in 2018. Transects were 18 meters in length. Adult coral colonies (&gt;=5 cm) were surveyed within four (1.0 x 2.5 m) segments at 5 meter increments along the 18 meter transect in the following manner: 0-2.5 m (segment 1); 5.0-7.5 m (segment 3); 10-12.5 m (segment 5); and 15 - 17.5 m (segment 7). All colonies whose center fell within 0.5 m on either side of each transect line were identified to lowest taxonomic level possible (species or genus), measured for size (maximum diameter to nearest cm), and morphology was noted. In addition, partial mortality and condition of each colony was assessed. Partial mortality was estimated as percent of the colony in terms of old dead and recent dead. The cause of recent mortality was identified if possible. The condition of each colony including disease (not attributed to recent tissue loss) and bleaching was noted along with the extent (percent of colony affected) and level of severity (range from moderate to acute). The lowest taxonomic level of coral identification was genus except for a select number of species consistently identified to species by all divers conducting the surveys.  The number of species may change for each survey year depending on the experience and training of the benthic divers conducting the surveys. The list of coral species is included for each survey year.

Within the same four segments per transect as the adult coral surveys, crustose coralline algae (CCA) diseases and Alcyonarian disease are surveyed. In each segment, each occurrence of a specific disease is identified and the lesion is measured (maximum diameter). 

In addition to the adult coral surveys, CCA diseases, and Alcyonarian disease, the presence of other Anthozoans (other cnidarians including Alcyonareans, Zoantharians, coralliomorphs and Antipatharians) are also noted.  These data exist as individual records coded for each group. This portion of the survey was not conducted in 2018.

Juvenile coral colonies (&lt;5 cm) were surveyed within three (1.0 x 1.0 m) segments along the same two transects from 2014 to 2017 or along the single transect in 2018: 0-1.0 m (segment 1); 5.0-6.0 m (segment 3); and 10.0-11.0 m (segment 5). Juvenile colonies were distinguished in the field by a distinct tissue and skeletal boundary (not a fragment of a larger colony). Each juvenile colony was identified to lowest taxonomic level (genus or species) and measured for size by recording both the maximum and perpendicular diameter to the nearest 2 mm.</gco:CharacterString>
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                <gco:CharacterString>Raw data include individual colony records with the corresponding physical data which reflect the description of the site. An individual colony record for adult corals includes colony species/genus identification, morphology, maximum diameter (cm), percent old dead, percent recent dead, cause of recent dead general category, cause of recent dead specific category, condition, extent and severity. 

Juvenile coral colony records include colony species/genus identification, morphology, maximum diameter (cm) and perpendicular diameter (cm). 

For species level identification of adult and juvenile corals, check the species list for each year to ensure species identification across all divers conducting the surveys.

Individual records for crustose coralline algae diseases use the taxon code CALG and the Alcyonarian disease uses the taxon code for the octocoral genus.  The colony length measurement is the maximum diameter of the lesion for both disease types.

The raw presence/absence data for other Anthozoans include the general identification code and 0 or -1 to represent absence or presence respectively.

The physical data for all records includes the following: region, island, site, date (day, month, year), latitude (dd), longitude (dd), transect, segment, segment length, segment width, minimum depth (ft), and maximum depth.</gco:CharacterString>
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                            <gco:CharacterString>dione.swanson@noaa.gov</gco:CharacterString>
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                    <gco:CharacterString>Swanson D, Bailey H, Schumacher B, Ferguson M, Vargas-Angel B. 2018. Ecosystem Sciences Division standard operating procedures: data collection for rapid ecological assessment benthic surveys. U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-71, 63 p. doi:10.25923/39jh-8993.</gco:CharacterString>
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                        <gco:Date>2018-08-01</gco:Date>
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                              <gmd:name>
                                <gco:CharacterString>NOAA Institutional Repository</gco:CharacterString>
                              </gmd:name>
                              <gmd:description>
                                <gco:CharacterString>Source Citation URL</gco:CharacterString>
                              </gmd:description>
                              <gmd:function>
                                <gmd:CI_OnLineFunctionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="information">information</gmd:CI_OnLineFunctionCode>
                              </gmd:function>
                            </gmd:CI_OnlineResource>
                          </gmd:onlineResource>
                        </gmd:CI_Contact>
                      </gmd:contactInfo>
                      <gmd:role gco:nilReason="inapplicable" />
                    </gmd:CI_ResponsibleParty>
                  </gmd:citedResponsibleParty>
                </gmd:CI_Citation>
              </gmd:sourceCitation>
            </gmd:LI_Source>
          </gmd:source>
        </gmd:LI_Lineage>
      </gmd:lineage>
    </gmd:DQ_DataQuality>
  </gmd:dataQualityInfo>
  <gmd:metadataConstraints>
    <gmd:MD_LegalConstraints>
      <gmd:accessConstraints>
        <gmd:MD_RestrictionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_RestrictionCode" codeListValue="otherRestrictions">otherRestrictions</gmd:MD_RestrictionCode>
      </gmd:accessConstraints>
      <gmd:useConstraints>
        <gmd:MD_RestrictionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_RestrictionCode" codeListValue="otherRestrictions">otherRestrictions</gmd:MD_RestrictionCode>
      </gmd:useConstraints>
      <gmd:otherConstraints>
        <gco:CharacterString>Access Constraints: None | Use Constraints: None</gco:CharacterString>
      </gmd:otherConstraints>
    </gmd:MD_LegalConstraints>
  </gmd:metadataConstraints>
  <gmi:acquisitionInformation>
    <gmi:MI_AcquisitionInformation>
      <gmi:instrument gco:nilReason="inapplicable" />
    </gmi:MI_AcquisitionInformation>
  </gmi:acquisitionInformation>
</gmi:MI_Metadata>