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            <gco:CharacterString>Winston M, Couch C, Ferguson M, Huntington B, Swanson D, Vargas-ÃÂngel B. 2019. Ecosystem Sciences Division Standard Operating Procedures: Data Collection for Rapid Ecological Assessment Benthic Surveys, 2018 Update. NOAA Tech. Memo. NOAA-TM-NMFS-PIFSC-92, 66 p. doi:10.25923/w1k2-0y84</gco:CharacterString>
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        <gco:CharacterString>NCRMP CORAL DEMOGRAPHIC DATA HAS NOW BEEN MERGED INTO A PACIFIC-WIDE METADATA RECORD -- PLEASE REFER TO https://www.fisheries.noaa.gov/inport/item/71550 FOR MOST UPDATED DATA.

The data described here result from benthic coral demographic surveys within belt transects of specified length and width for two life stages (juveniles and adults) across the Hawaiian archipelago since 2013. The data provide information on adult coral colony counts, morphology, size, partial mortality (old and recent dead), presence and causation of disease and other compromised health conditions, including bleaching. Juvenile colony surveys include morphology and size. Taxonomic identification of adult colonies is to the species level and genus level for juveniles.

A two-stage stratified random sampling (StRS) design was employed to survey the coral reef ecosystems of the Hawaiian archipelago in 2013, 2016, and 2017 and starting in 2019 a one-stage StRS design was employed. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0Ã¢ÂÂ30 m depth range. The stratification scheme included island, reef zone, and depth (i.e., shallow: &gt;0Ã¢ÂÂ6 m; mid-depth: &gt;6Ã¢ÂÂ18 m; and deep: &gt;18Ã¢ÂÂ30 m), habitat structure type, as well as reef zone (i.e., forereef, backreef, lagoon, and protected slope; the latter three only in the Northwestern Hawaiian Islands). Sampling effort allocation was determined based on strata area and sites randomly located within strata. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than more transects per site. Therefore, site-level estimates and site-to-site comparisons should proceed with caution.

The data were collected as part of the NOAA Pacific Islands Fisheries Science Center (PIFSC) and Ecosystem Sciences Division (ESD; formerly the Coral Reef Ecosystem Division) led National Coral Reef Monitoring Program (NCRMP) missions around the Main Hawaiian Islands in 2013, 2016 and 2019, and the Northwestern Hawaiian Islands in 2016. Data collected as part of the 2014 and 2015 PapahÃÂnaumokuÃÂkea Marine National Monument funded research cruises in the Northwestern Hawaiian Islands are also included. The latter are funded separately but are complementary to the ESD NCRMP-funded data.</gco:CharacterString>
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        <gco:CharacterString>The National Coral Reef Monitoring Program (NCRMP) details a long-term approach to provide an ecosystem perspective via monitoring climate, fish, benthic, and socioeconomic variables in a consistent and integrated manner. The NCRMP coordinates various Coral Reef Conservation Coral Reef Program (CRCP) biological, physical, and human dimensions activities into a cohesive NOAA-wide effort. Through the implementation of the NCRMP, NOAA is able to clearly and concisely communicate results of national-scale monitoring to national, state, and territorial policy makers, resource managers, and the public on a periodic basis.

In some circumstances, additional survey efforts using identical survey methods and design are conducted to supplement or otherwise complement NCRMP surveys. As methods, design and sometimes personnel are consistent across those surveys and NCRMP; and where the supplementary surveys are expressly intended to be merged with NCRMP data, we include those surveys here. NCRMP research cruises are typically conducted on a triennial basis in the Hawaiian Archipelago. In the Northwestern Hawaiian Islands, PapahÃÂnaumokuÃÂkea Marine National Monument complements NCRMP by surveying each of the years in between the NCRMP survey years.</gco:CharacterString>
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        <gmd:MD_Keywords>
          <gmd:keyword>
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            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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        <gmd:MD_Keywords>
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          <gmd:keyword>
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          <gmd:keyword>
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          <gmd:keyword>
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          <gmd:keyword>
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          <gmd:keyword>
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          <gmd:keyword>
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          </gmd:keyword>
          <gmd:keyword>
            <gco:CharacterString>EARTH SCIENCE &gt; Oceans &gt; Marine Biology &gt; Coral Communities</gco:CharacterString>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
          </gmd:type>
          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>CoRIS Theme Thesaurus</gco:CharacterString>
              </gmd:title>
              <gmd:date gco:nilReason="missing" />
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      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
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          </gmd:keyword>
          <gmd:keyword>
            <gco:CharacterString>CORAL - COLONY SIZE</gco:CharacterString>
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          <gmd:keyword>
            <gco:CharacterString>CORAL - SPECIES IDENTIFICATION</gco:CharacterString>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
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          <gmd:keyword>
            <gco:CharacterString>survey - biological</gco:CharacterString>
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          <gmd:keyword>
            <gco:CharacterString>survey - swimmer/diver</gco:CharacterString>
          </gmd:keyword>
          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
          </gmd:type>
          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC OBSERVATION TYPES THESAURUS</gco:CharacterString>
              </gmd:title>
              <gmd:date gco:nilReason="missing" />
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          </gmd:thesaurusName>
        </gmd:MD_Keywords>
      </gmd:descriptiveKeywords>
      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
          <gmd:keyword>
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          <gmd:keyword>
            <gco:CharacterString>Oscar Elton Sette</gco:CharacterString>
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          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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          <gmd:thesaurusName>
            <gmd:CI_Citation>
              <gmd:title>
                <gco:CharacterString>NODC PLATFORM NAMES THESAURUS</gco:CharacterString>
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          <gmd:keyword>
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          <gmd:keyword>
            <gco:CharacterString>RAMP</gco:CharacterString>
          </gmd:keyword>
          <gmd:keyword>
            <gco:CharacterString>REA</gco:CharacterString>
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          <gmd:keyword>
            <gco:CharacterString>Rapid Ecological Assessment</gco:CharacterString>
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          <gmd:keyword>
            <gco:CharacterString>Reef Assessment and Monitoring Program</gco:CharacterString>
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            <gco:CharacterString>belt transect</gco:CharacterString>
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            <gmd:MD_KeywordTypeCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_KeywordTypeCode" codeListValue="theme">theme</gmd:MD_KeywordTypeCode>
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      <gmd:descriptiveKeywords>
        <gmd:MD_Keywords>
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          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="dataCentre">dataCentre</gmd:MD_KeywordTypeCode>
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                    <gco:Date>2017-04-24</gco:Date>
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                    <gmd:CI_Contact>
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                        <gmd:CI_OnlineResource>
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                            <gmd:URL>https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords</gmd:URL>
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          <gmd:type>
            <gmd:MD_KeywordTypeCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#MD_KeywordTypeCode" codeListValue="project">project</gmd:MD_KeywordTypeCode>
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          <gmd:thesaurusName>
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      <gmd:resourceConstraints>
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      <gmd:resourceConstraints>
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          <gmd:otherConstraints>
            <gco:CharacterString>Use Constraints: Please cite PIFSC Ecosystem Sciences Division and PapahÄnaumokuÄkea Marine National Monument (for 2014, 2015, and 2017 surveys) when using the data.

Example:

Ecosystem Sciences Division; Pacific Islands Fisheries Science Center (2022). National Coral Reef Monitoring Program: Stratified Random Surveys (StRS) of Coral Demography (Adult and Juvenile Corals) across the Hawaiian Archipelago since 2013. NOAA's National Center for Environmental Information, https://www.fisheries.noaa.gov/inport/item/36164</gco:CharacterString>
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            <gco:CharacterString>Distribution Liability: While every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty.</gco:CharacterString>
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                    <gmd:CI_Citation>
                      <gmd:title>
                        <gco:CharacterString>NOAA/NMFS/EDM</gco:CharacterString>
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              <gmd:date gco:nilReason="unknown" />
              <gmd:identifier>
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                        <gco:CharacterString>NOAA/NMFS/EDM</gco:CharacterString>
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                  <gmd:contactInfo>
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      <gmd:extent>
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              </gmd:extent>
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            <gco:CharacterString>Observations were made by experienced benthic survey personnel who have been trained, undergone a series of calibration surveys and coral taxon identification testing, and have met a set of minimum standards for colony assessment and taxon identification in each region.  The accuracy of species and genus level identification was high.  The lowest taxonomic level of coral identification was species in the Main Hawaiian Islands and the Northwestern Hawaiian Islands. The number of species may change for each survey year depending on the experience and training of the benthic divers. The list of coral species is included for each survey year. The individual records within each data set may include many more species than encompassed by the lists; however, these were not consistently identified across all surveys so these records should be assessed at the genus level.  

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            <gco:CharacterString>Only shallow water (0 to 30 meter depth range) hard-bottom habitats are surveyed. The survey sites were randomly selected using a systematic process based on available habitat and bathymetric data. Although efforts are made to include broad spatial coverage of surveys at each island, weather conditions and other environmental constraints may have prevented the team from surveying exposed reef areas.

The value -9 has been used a placeholder for missing values for several fields. See the entities and attributes under 'child items'.</gco:CharacterString>
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            <gco:CharacterString>The stratified random sampling (StRS) design and belt transect methodology for adult and juvenile corals, employed by the PIFSC Ecosystem Sciences Division since 2013 and by Papahānaumokuākea Marine National Monument in 2014 and 2015. A two-stage StRS design was used between 2013 and 2017. ESD transitioned to a one-stage design in 2018.</gco:CharacterString>
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                <gco:CharacterString>A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems in the Hawaiian Archipelago. A two-stage StRS design was used between 2013 and 2017. ESD transitioned to a one-stage design in 2018. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats. The stratification scheme included island, reef zone, and depth, as well as habitat structure type in the Hawaiian Archipelago.  The habitat structure types included simple, complex, and coral-rich. Depth categories of shallow (&gt;0-6 m), mid (&gt;6-18m) and deep (&gt;18-30 m) were also incorporated into the stratification scheme. Allocation of sampling effort was proportional to strata area. Sites were randomly selected within each stratum.

A geographic information system (GIS) and digital spatial databases of benthic habitats (NOAA National Centers for Coastal Ocean Science NCCOS), reef zones (IKONOS satellite imagery, NDGC 1998), bathymetry (NDGC 1998, ESD benthic mapping data), and marine reserve boundaries (NOAA) were used to facilitate spatial delineation of the sampling survey domain, strata, and sample units.  Map resolution was such that the survey domain could be overlain by a grid using a GIS with individual cells of size 50 m by 50 m in area.  Sampling scheme following Cochran (1977) were employed to control for spatial variation in population parameters at scales smaller than the grid cell minimum mapping unit (2,500 sq meters). Grid cells containing at least 10% hard-bottom reef habitats were designated as primary sample units (referred to as sites). In two-stage StRS design surveys, the second-stage sample unit was defined as a diver visual belt transect of fixed area (10 sq meters or less).</gco:CharacterString>
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                <gco:CharacterString>At each site, benthic Rapid Ecological Assessment (REA) surveys were conducted within 10 sq. meter belt transects, 18 meters in length. The two-stage StRS design used from 2013-2017 surveyed along two belt transects, whereas the one-stage StRS design used from 2018 to present surveyes along one belt transect. Adult coral colonies (&gt;=5 cm) were surveyed within four (1.0 x 2.5 m) segments at 5 meter increments along the 18 meter transect in the following manner: 0-2.5 m (segment 1 in 2013-2016, segment 0 in 2019); 5.0-7.5 m (segment 3 in 2013-2016, segment 5 in 2019); 10-12.5 m (segment 5 in 2013-2016, segment 10 in 2019); and 15-17.5 m (segment 7 in 2013-2016, segment 15 in 2019). All colonies whose center fell within 0.5 m on either side of each transect line were identified to lowest taxonomic level possible (species or genus), measured for size (maximum diameter to nearest cm), and morphology was noted. In addition, partial mortality and condition of each adult coral colony was assessed. Partial mortality was estimated as percent of the colony in terms of old dead and recent dead. The cause of recent mortality was identified if possible. The condition of each colony including disease (not attributed to recent tissue loss) and bleaching was noted along with the extent (percent of living colony area affected) and level of severity. From 2013-2017, severity ranged from moderate to acute. In 2018-present, severity ranges from 1 to 3; 1 = just starting to lose pigmentation, 2 = significant pigmentation loss and 3 = full loss of pigmentation. The number of unique species may change between survey years depending on the experience and training of the benthic divers conducting the surveys. The list of coral species and genera that all divers were comfortable identifying is included for each survey year.

Two-stage StRS surveys from 2013-2017 also included surveys of crustose coralline algae (CCA) diseases and Alcyonarian disease within the same transect segments as the adult coral surveys. In each segment, each occurrence of a specific disease was identified and the lesion was measured (maximum diameter). The presence of other Anthozoans (other cnidarians including Alcyonareans, Zoantharians, corallimorphs and Antipatharians) are also noted. These data exist as individual records coded for each group. This portion of the survey was not conducted by PMNM in 2014 and 2015 or surveys conducted in 2018 and 2019.

Juvenile coral colonies (&lt;5 cm) were surveyed within three (1.0 x 1.0 m) segments along the same two transects: 0-1.0 m (segment 1 in 2013-2016, segment 0 in 2019); 5.0-6.0 m (segment 3 in 2013-2016, segment 5 in 2019); and 10.0-11.0 m (segment 5 in 2013-2016, segment 10 in 2019). Juvenile colonies were distinguished in the field by a distinct tissue and skeletal boundary (not a fragment of larger colony). Each juvenile colony was identified to lowest taxonomic level (genus or species) and measured for size by recording both the maximum diameter (and perpendicular diameter in surveys from 2013-2017) to the nearest 2 mm.</gco:CharacterString>
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                <gco:CharacterString>Raw data include individual colony records with the corresponding physical data which reflect the description of the site. An individual colony record for adult corals includes colony species/genus identification, morphology, maximum diameter (cm), percent old dead, percent recent dead, cause of recent dead general category, cause of recent dead specific category, condition, extent and severity. 

Juvenile coral colony records include colony species/genus identification, morphology, maximum diameter (cm). Records from 2013-2017 also include perpendicular diameter (cm).  

For species level identification of adult and juvenile corals, check the species list for each year to ensure species identification across all divers conducting the surveys.

Individual records for crustose coralline algae diseases use the taxon code CALG and the Alcyonarian disease uses the taxon code for the octocoral genus. The colony length measurement is the maximum diameter of the lesion for both disease types. 

The raw presence/absence data for other Anthozoans include the general identification code and 0 or -1 to represent absence or presence, respectively.

The physical data for all records includes the following: region, island, site, date (day, month, year), latitude (dd), longitude (dd), transect, segment, segment length, segment width, minimum depth (ft), and maximum depth.</gco:CharacterString>
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                    <gco:CharacterString>Swanson D, Bailey H, Schumacher B, Ferguson M, Vargas-Angel B. 2018.  Ecosystem Sciences Division standard operating procedures: data collection for rapid ecological assessment benthic surveys.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-71, 63 p. doi:10.25923/39jh-8993.</gco:CharacterString>
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                        <gco:Date>2018-08-01</gco:Date>
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                    <gco:CharacterString>Winston M, Couch C, Ferguson M, Huntington B, Swanson D, Vargas-Ángel B. 2019. Ecosystem Sciences Division Standard Operating Procedures: Data Collection for Rapid Ecological Assessment Benthic Surveys, 2018 Update. NOAA Tech. Memo. NOAA-TM-NMFS-PIFSC-92, 66 p. doi:10.25923/w1k2-0y84</gco:CharacterString>
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                                <gco:CharacterString>Source Citation URL</gco:CharacterString>
                              </gmd:description>
                              <gmd:function>
                                <gmd:CI_OnLineFunctionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="information">information</gmd:CI_OnLineFunctionCode>
                              </gmd:function>
                            </gmd:CI_OnlineResource>
                          </gmd:onlineResource>
                        </gmd:CI_Contact>
                      </gmd:contactInfo>
                      <gmd:role gco:nilReason="inapplicable" />
                    </gmd:CI_ResponsibleParty>
                  </gmd:citedResponsibleParty>
                </gmd:CI_Citation>
              </gmd:sourceCitation>
            </gmd:LI_Source>
          </gmd:source>
        </gmd:LI_Lineage>
      </gmd:lineage>
    </gmd:DQ_DataQuality>
  </gmd:dataQualityInfo>
  <gmd:metadataConstraints>
    <gmd:MD_LegalConstraints>
      <gmd:accessConstraints>
        <gmd:MD_RestrictionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_RestrictionCode" codeListValue="otherRestrictions">otherRestrictions</gmd:MD_RestrictionCode>
      </gmd:accessConstraints>
      <gmd:useConstraints>
        <gmd:MD_RestrictionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#gmd:MD_RestrictionCode" codeListValue="otherRestrictions">otherRestrictions</gmd:MD_RestrictionCode>
      </gmd:useConstraints>
      <gmd:otherConstraints>
        <gco:CharacterString>Access Constraints: None | Use Constraints: None</gco:CharacterString>
      </gmd:otherConstraints>
    </gmd:MD_LegalConstraints>
  </gmd:metadataConstraints>
  <gmi:acquisitionInformation>
    <gmi:MI_AcquisitionInformation>
      <gmi:instrument gco:nilReason="inapplicable" />
    </gmi:MI_AcquisitionInformation>
  </gmi:acquisitionInformation>
</gmi:MI_Metadata>